species:   Rhsol
pid:       PID0588
parent:    Rhi-milR-19
paralog:   
locus:     KB317701.1:200456-200527
matures:   ['AGAGGAGCUGGAUCUCAAGAUGC', 'AGUCAGAUCAAGCACUCGU']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317701.1:200456-200527

7 out of bounds
21 alignments
15 proper strand
13 stranded perfect matches

     ***********************           **************************       
AUCUCAGCUCAGUCAGAUCAAGCACUCGUAUGGCCUUGCAGAGGAGCUGGAUCUCAAGAUGCGUCAAGAGAA
.((((.((.((...(((((.(((.((((((......))).)))..))).))))).....)).))...)))).
---------------------------------------AGAGGAGCUGGAUCUCAAGAUGC---------- l=23 a=2 c
----------AGUCAGAUCAAGCACUCGU------------------------------------------- l=19 a=0 c*
-----------------------------------------AGGAGCUGGAUCUCAAGAUGCGUC------- l=24 a=3 ma
-------CUCAGUCAGAUCAAGCACUCG-------------------------------------------- l=21 a=0 ma*

--------------------------CGUAUGGCCUUGCAGAGGAGCUGG---------------------- l=24 a=1 
----------------------------UAUGGCCUUGCAGAGGAGCUGGA--------------------- l=23 a=2 
-----------------------------------UUGCAGAGGAGCUGGAUCUCAAG-------------- l=23 a=1 
--------------------------------------CAGAGGAGCUGGAUCUCAAGAUGC---------- l=24 a=2 
---------------------------------------AGAGGAGCUGGAUCUCAAGAUGC---------- l=23 a=2 (c)
---------------------------------------AGAGGAGCUGGAUCUCAAGAUGCa--------- l=24 a=2 
-----------------------------------------AGGAGCUGGAUCUCAAGAUGCG--------- l=22 a=1 
-----------------------------------------AGGAGCUGGAUCUCAAGAUGCGU-------- l=23 a=1 
-----------------------------------------AGGAGCUGGAUCUCAAGAUGCGUC------- l=24 a=3 (ma)

mb-01010
ax-1001011
ku-01
ss-111110101000
fn-001
